Hands-on Lab: Difference between revisions
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= Unix = | = Unix = | ||
*[[Media:gs_linux.pdf|Getting Started With Linux]] | |||
*[http://www.doc.ic.ac.uk/~wjk/UnixIntro/ UNIX Tutorial] | |||
= | =MATLAB= | ||
==Hands-on tutorials by the Instructor== | |||
*[[Media:matlab_tutorial_phys660.m|Getting started with MATLAB]] | |||
*[[Media:autocorr_examples.m|Autocorrelation]] | |||
*[[Media:fft_matlab.m|Fast Fourier Transform]] | |||
*[[Media:sparse_matrices.m|Sparse matrices]] | |||
*[[Media:gpu_speedup.m|GPU accelerated computing with MATLAB]] | |||
==Hands-on tutorials by MathWorks== | |||
*[http://www.mathworks.com/videos/getting-started-with-matlab-68985.html?type=shadow Getting Started video] | |||
*[https://www.mathworks.com/academia/student_center/tutorials/register.html MATLAB video tutorials for students and faculty] | |||
*[http://www.mathworks.com/products/matlab/examples.html# Code Examples] | |||
*[http://www.mathworks.com/academia/student_center/tutorials/launchpad.html MATLAB Student Center] | |||
*[http://www.mathworks.com/help/matlab/matlab_prog/run-sections-of-programs.html How to run code sections] | |||
*[http://www.mathworks.com/discovery/matlab-gpu.html Introduction to GPU computing in MATLAB] | |||
*[http://blogs.mathworks.com/loren/2012/02/06/using-gpus-in-matlab/ Using GPUs with MATLAB] | |||
= LaTeX = | |||
== Templates for project reports == | |||
*[[Media:phys660_template.tex|PHYS660 template]] and the embedded [[Media:newton.pdf|PDF figure]] | |||
*Math into LaTeX: [[Media:latex_tips.tex|How to Beautify Equations]] (and the embedded [[Media:decay.pdf|PDF figure]]) | |||
== LaTeX packages == | |||
*[http://miktex.org/ MikTeX] (free LaTeX implementation for Windows) | |||
*[http://texstudio.sourceforge.net/ Texstudio] (free TeX Editor for Windows, Linux, or Mac OS) | |||
= Mathematica = | |||
==Hands-on tutorials by the Instructor == | |||
*[[Media:math_start_2008.nb|Getting Started]] | |||
*[[Media:math_ode_2008.nb|Differential Equations]] | |||
*[[Media:math_linear.nb|Linear Algebra]] | |||
==Hands on tutorials by Wolfram Research== | |||
*[http://url.wolfram.com/5_nCec Hands-on start to Mathematica] | |||
= Java Applets = | = Java Applets = | ||
== Dissipative Chaos == | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/Duffing2/ Duffing equation attractor] | |||
*[http://www.physics.orst.edu/~rubin/nacphy/JAVA_pend/ Damped driven pendulum] | |||
*[http://www.phy.davidson.edu/StuHome/chgreene/Chaos/Pendulum/poincare_section.htm Poincare section for damped driven pendulum] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/Lorenz/ Lorentz attractor] | |||
==Conservative Chaos== | |||
*[http://demonstrations.wolfram.com/RestrictedThreeBodyProblemInAPlane/ Chaos in three-body problem restricted to 2D plane] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/DP/ Poincare section of double pendulum] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/EP/ Extensible pendulum] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/Standard/ Standard area preserving map] | |||
==Transient Conservative Chaos== | |||
*[http://www.physics.orst.edu/~rubin/CPUG/Nacphy/CPapplets/CHAOS_scatt/Disper2e.html Chaotic scattering] | |||
==Fractals== | |||
*[http://polymer.bu.edu/java/java/coastline/coastline.html Fractal coastlines] | |||
*[http://apricot.ap.polyu.edu.hk/dla/dla.html Diffusion Limited aggregation] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/Mandelbrot/ Mandelbrot set] | |||
*[http://brain.cc.kogakuin.ac.jp/~kanamaru/Chaos/e/Julia/ Julia set] | |||
==Fourier Analysis == | |||
*[https://phet.colorado.edu/en/simulation/normal-modes Vibrational normal modes in 1D and 2D] | |||
*[http://fermi.la.asu.edu/ccli/applets/phonon/phonon.html Phonons in solids] | |||
*[http://comp.chem.umn.edu/database_struct/ethanol.html Vibrational normal modes of organic molecules] | |||
*[http://www.jhu.edu/~signals/fourier2/index.html Fourier series] | |||
*[http://www.jhu.edu/~signals/ctftprops/indexCTFTprops.htm Fourier transform] | |||
==Nonlinear Physics and Solitons== | |||
*[http://www.phys.hawaii.edu/~teb/optics/java/toda/index.html Toda lattice soliton] | |||
*[http://www.ma.hw.ac.uk/solitons/ KdV soliton] | |||
*[http://stp.clarku.edu/simulations/fpu/index.html FPU paradox] | |||
==Statistical Physics== | |||
*[http://physics.ucsc.edu/~peter/java/ising/keep/ising.html Ising model] | |||
*[http://polymer.bu.edu/java/java/montepi/MontePi.html Monte Carlo estimatation for <math> \pi </math>] | |||
*[http://polymer.bu.edu/java/java/1drw/RandWalk1D.html Brownian motion] | |||
*[http://polymer.bu.edu/java/java/1drw/RandWalk1D.html Random walk in 1D] | |||
*[http://polymer.bu.edu/java/java/2drw/RandWalk2D.html Random walk in 2D] | |||
*[http://polymer.bu.edu/java/java/saw/saw.html Self-avoiding random walk] | |||
*[http://www.physics.buffalo.edu/gonsalves/Java/Percolation.html Percolation] | |||
*[http://physics.weber.edu/schroeder/software/MDApplet.html Molecular dynamics] | |||
==Complex Systems== | |||
*[http://cell-auto.com/ Cellular automata] | |||
*[http://www.physics.buffalo.edu/gonsalves/Java/GameOfLife.html Game of life] | |||
*[http://www.cmth.bnl.gov/~maslov/applets.htm BTW sandpile CAM: A model of self-organized criticality] | |||
*[http://www.physics.udel.edu/~bnikolic/teaching/phys660/C%2B%2B/project6_exe_meyer.exe BTW sandpile CAM simulation with 3D visualization by DPA student John Meyer] | |||
*[http://cps-www.bu.edu/java/java/blaze/blaze.html Forest fire: A model of self-organized criticality] | |||
*[http://lcn.epfl.ch/tutorial/english/hopfield/html/index.html Hopfield neural network as a model of associative memory] | |||
*[http://www.nnwj.de/ Neural networks with Java] | |||
*[http://neuron.eng.wayne.edu/bpImageCompression9PLUS/bp9PLUS.html Image compression by neural networks] | |||
*[http://www.physics.emory.edu/faculty/boettcher/Research/EO_demo/eo_demo.htm#EOdemo_SG Spin glasses] | |||
*[http://www.obitko.com/tutorials/genetic-algorithms/ Genetic algorithms] | |||
Latest revision as of 08:24, 14 September 2014
Unix
MATLAB
Hands-on tutorials by the Instructor
- Getting started with MATLAB
- Autocorrelation
- Fast Fourier Transform
- Sparse matrices
- GPU accelerated computing with MATLAB
Hands-on tutorials by MathWorks
- Getting Started video
- MATLAB video tutorials for students and faculty
- Code Examples
- MATLAB Student Center
- How to run code sections
- Introduction to GPU computing in MATLAB
- Using GPUs with MATLAB
LaTeX
Templates for project reports
- PHYS660 template and the embedded PDF figure
- Math into LaTeX: How to Beautify Equations (and the embedded PDF figure)
LaTeX packages
- MikTeX (free LaTeX implementation for Windows)
- Texstudio (free TeX Editor for Windows, Linux, or Mac OS)
Mathematica
Hands-on tutorials by the Instructor
Hands on tutorials by Wolfram Research
Java Applets
Dissipative Chaos
- Duffing equation attractor
- Damped driven pendulum
- Poincare section for damped driven pendulum
- Lorentz attractor
Conservative Chaos
- Chaos in three-body problem restricted to 2D plane
- Poincare section of double pendulum
- Extensible pendulum
- Standard area preserving map
Transient Conservative Chaos
Fractals
Fourier Analysis
- Vibrational normal modes in 1D and 2D
- Phonons in solids
- Vibrational normal modes of organic molecules
- Fourier series
- Fourier transform
Nonlinear Physics and Solitons
Statistical Physics
- Ising model
- Monte Carlo estimatation for
- Brownian motion
- Random walk in 1D
- Random walk in 2D
- Self-avoiding random walk
- Percolation
- Molecular dynamics
Complex Systems
- Cellular automata
- Game of life
- BTW sandpile CAM: A model of self-organized criticality
- BTW sandpile CAM simulation with 3D visualization by DPA student John Meyer
- Forest fire: A model of self-organized criticality
- Hopfield neural network as a model of associative memory
- Neural networks with Java
- Image compression by neural networks
- Spin glasses
- Genetic algorithms
